Gwm. Visser et al., FLUORINATED PYRIMIDINES .4. SYNTHESIS, PROPERTIES AND STEREOCHEMICAL CONVERSION OF THE CIS AND TRANS ISOMERS OF 6-ALKOXY-5-FLUORO-5,6-DIHYDROURACILS, Perkin transactions. 2, (2), 1994, pp. 231-236
The reaction of 6-acetoxy-5-fluoro-5,6-dihydrouracil with ROH (R = Me,
Et, Pr, Pr-i, Bu, Bu(t)) under acidic conditions has been investigate
d using F-18 as a tracer. The quantitative replacement of the OAc-grou
p proceeded predominantly with cisoid (gauche) stereochemistry, but up
on prolonged heating the amount of the trans compound increased. This
isomerization did not originate from epimerization at C-5. The trans c
ompounds-apart from being more stable towards substitution and elimina
tion than the corresponding cis compounds-gave invariably substitution
products with inversion of configuration, while the cis compounds mai
nly retained their configuration. Within the concept of the unifying i
on-pair mechanism it is proposed that the trans compound reacts via an
intimate protonated intermediate and the cis compound via a solvent-s
eparated protonated intermediate. As a result, it was not the gauche a
ttraction between the fluorine atom and the incoming nucleophile, but
the poor pi-donor ability of the C-F bond that was the determining fac
tor in the cisoid stereochemistry of 5-fluoro-5,6-dihydrouracil adduct
s.