The development of methodologies to identify the molecular lesions res
ponsible for different types of beta-thalassemia has made it possible
to correlate these data with clinical and hematological severity. We e
xamined DNA from 35 patients with beta-thalassemia, residents of the S
tate of Sao Paulo, Brazil, for some types of genetic modifying factors
: beta-thalassemia mutations, the upstream XmnI (G)y-globin gene polym
orphisms, and alpha-globin gene deletions. Additionally, the beta-like
gene cluster haplotypes and the presence of the Y-A(T) variant were s
tudied. The following mutations were present in the 70 chromosomes stu
died: 54.3% codon 39 (C-->T) (beta degrees); 18.6% IVS-I-6 (T-->C (bet
a(')); 18.6% IVS-I-110 (G-->A) (beta+), and 4.3% IVS-I-1 (G-->T) (beta
degrees). Haplotype II was associated with the nonsense mutation at c
odon 39, haplotype I with the IVS-I-110 and codon 39 mutations, and ha
plotypes VI and VII with the IVS-I-6 mutation. The XmnI polymorphism w
as detected in three out of 31 patients studied. No alpha-thalassemia
was detected among the thalassemia intermedia patients. The Y-A(T) var
iant was present in 87.1% of 31 thalassemia patients and was associate
d with the codon 39/haplotype II and IVS-I-6/haplotype VI mutations. T
his is the first study of the Brazilian population that has analyzed t
he beta-thalassemia mutations and of her molecular variants, and has c
orrelated them with the clinical manifestations.