Approximately one-third of the mammalian genome is composed of highly
repeated DNA sequences, of which the two major families, the long and
short interspersed nucleotide elements (LINEs and SINEs), are represen
ted in humans by L1 and Alu elements respectively. Both types of eleme
nt are considered to be retrotransposable and to play significant role
s in genomic function and evolution. The majority of inserted elements
are truncated and often rearranged relative to full-length elements;
usually, such retrotransposed sequences are flanked by target-site dup
lications of various lengths and contain 3' polyA tracts, common chara
cteristics of retrotransposal integration. Retrotransposal integration
s of Alu and L1 sequences into biologically important genes appear to
play significant roles in some human diseases. Most of the inserted se
quences that cause human diseases seem to belong to one or a few subse
ts of each type of retrotransposon, suggesting that only a few active
elements can function as templates for retrotransposition. Integration
s observed in oncogenes and in tumor suppressor genes may participate
in carcinogenesis by altering the activity of the affected genes. The
exact mechanism of these events is unclear; however, retrotransposal i
ntegration may be a general mechanism of mutation in humans.