We have shown that Escherichia coli pcnB mutants are lysogenized by ba
cteriophage lambda with lower efficiency as compared to the pcnB(+) st
rains. Our genetic analysis revealed that expression of the lambda cII
gene is decreased in the pcnB mutants. However, using various lacZ fu
sions we demonstrated that neither activities of p(L) and p(R) promote
rs nor transcription termination at t(R1) were significantly impaired
in the pcnB(-) host. On the other hand, we found that oop RNA, an anti
sense RNA for cll expression, is involved in this regulation. Primer p
rotection experiments revealed that oop RNA was polyadenylated and tha
t this polyadenylation was impaired in the pcnB mutant. We found that
the oop RNA was more abundant in the pcnB mutant than in the pcnB(+) s
train. Furthermore, we showed that activity of the p(0) promoter was n
ot stimulated in the pcnB mutant. Such findings indicated that degrada
tion of oop RNA in the pcnB strain was slower because of inefficient p
olyadenylation, which could lead to more effective inhibition of cII e
xpression by the antisense oop RNA, resulting in less efficient lysoge
nization of the;host. The oop RNA was found previously to play a role
in phage lambda development only under conditions of overproduction of
this transcript. Here we demonstrate for the first time, the physiolo
gical function of oop RNA in lambda development, confirming that this
short transcript plays an important role in the negative regulation of
cII gene expression during lambda infection. Moreover, polyadenylatio
n of oop RNA is one of very few known examples of specific RNA polyade
nylation by PAP I in prokaryotic cells and its role in gene expression
regulation. (C) 1998 Elsevier Science B.V. All rights reserved.