The wild ancestor of cultivated barley, Hordeum volgare subsp. spontan
eum (K. Koch) A. & Gr. (H. spontaneum), is a source of wide genetic di
versity, including traits that are important for malting quality. A hi
gh beta-amylase trait was previously identified in H. spontaneum strai
ns from Israel, and transferred into the backcross progeny of a cross
with the domesticated barley cv Adorra. We have used Southern-blot ana
lysis and beta-amy1 gene characterization to demonstrate that the high
beta-amylase trait in the backcross line is co-inherited with the bet
a-amy1 gene from the H. spontaneum parent. We have analyzed the beta-a
my1 gene organization in various domesticated and wild-type barley str
ains and identified three distinct beta-amy1 alleles. Two of these bet
a-amy1 alleles were present in modern barley, one of which was specifi
cally found in good malting barley cultivars. The third allele, linked
with high grain beta-amylase activity, was found only in a H. spontan
eum strain from the Judean foothills in Israel. The sequences of three
isolated beta-amy1 alleles are compared. The involvement of specific
intron III sequences, in particular a 126-bp palindromic insertion, in
the allele-dependent expression of beta-amylase activity in barley gr
ain is proposed.