Internally transcribed spacer (ITS) regions of the rRNA gene cluster i
n isolates of Ascochyta spp, were amplified and digested with restrict
ion endonucleases. Addition of fragment sizes from conventional gel el
ectrophoresis gave anomalous sizes which suggested the presence of mor
e than one PCR product. Separation in HA-Yellow containing agarose gel
allowed the detection of fragments of the same size but with differen
t sequences. Isolates of Ascochyta spp. were shown to possess multiple
PCR-amplification products of the same sizes, but with significant se
quence differences.