Three classes of multigene family-encoded receptors enable NK cells to
discriminate between polymorphic MHC class I molecules: Ly-49 homodim
ers, CD94/NKG2 heterodimers and the killer cell inhibitory receptors (
KIR). Of these, CD94/NKG2 has been characterized in both rodents and h
umans. In contrast, Ly-49 family members have hitherto been found only
in rodents, and KIR molecules only in the human. In this report, we d
escribe a human cDNA, termed Ly-49L, that constitutes the first human
member of the Ly-49 multigene family. Compared with rodent Ly-49 molec
ules, the Ly-49L sequence contains a premature stop codon and predicts
a truncated protein that lacks the distal part of a C-terminal lectin
domain. Evidence is presented that the premature stop codon results f
rom incomplete excision of the intron between the first two lectin dom
ain exons. Splice variants predicting a full-size Ly-49L protein were
not detected. As demonstrated by Northern blot analysis, Ly49L was tra
nscribed by IL-2-activated NK cells, but not by freshly isolated B or
T cells. PCR screening of a 22-clone yeast artificial chromosome conti
g localized the LY49L locus to the human NK gene complex on chromosome
12p12-p13. Southern blot analysis of genomic DNA showed a simple patt
ern with a full-length Ly-49L probe at low stringency hybridization co
nditions, suggesting that Ly-49L may be the only human member of the L
y-49 multigene family.