The ubiquitin pathway has been implicated in the regulation of the abu
ndance of proteins that control cell growth and proliferation. We have
identified and characterized a novel human ubiquitin isopeptidase, UB
PY, which both as a recombinant protein and upon immunoprecipitation f
rom cell extracts is able to cleave linear or isopeptide-linked ubiqui
tin chains. UBPY accumulates upon growth stimulation of starved human
fibroblasts, and its levels decrease in response to growth arrest indu
ced by cell-cell contact. Inhibition of UBPY accumulation by antisense
plasmid microinjection prevents fibroblasts from entering S-phase in
response to serum stimulation. By increasing or decreasing the cellula
r abundance of UBPY or by overexpressing a catalytic site mutant, we d
etect substantial changes in the total pattern of protein ubiquitinati
on, which correlate stringently with cell proliferation. Our results s
uggest that UBPY plays a role in regulating the overall function of th
e ubiquitin-proteasome pathway. Affecting the function of a specific U
BP lit vivo could provide novel tools for controlling mammalian cell p
roliferation.