We demonstrate efficient detection of single fluorescent molecules elu
ting off a polystyrene microsphere optically trapped in a flowing shea
th stream. A 1 mu m diameter analyte doped microsphere was positioned
similar to 20 mu m upstream of a 16 mu m diameter probe laser without
significant degradation of the detection signal-to-noise ratio due to
scattered laser light and fluorescence from the microsphere. In compar
ison to more standard capillary sample introduction, the microsphere c
auses only small perturbations to the sheath fluid how. The small diam
eter of the analyte stream eluting from the microsphere results in a g
reater than 90% detection efficiency for single rhodamine-6G molecules
, limited primarily by the photostability of the dye.