The evolutionary relationships among arthropod hemocyanins and insect
hexamerins were investigated. A multiple sequence alignment of 12 hemo
cyanin and 31 hexamerin subunits was constructed and used for studying
sequence conservation and protein phylogeny. Although hexamerins and
hemocyanins belong to a highly divergent protein superfamily and only
Is amino acid positions are identical in all the sequences, the core s
tructures of the three protein domains are well con served. Under the
assumption of maximum parsimony, a phylogenetic tree was obtained that
matches perfectly the assumed phylogeny of the insect orders. An inte
resting common clade of the hymenopteran and coleopteran hexamerins wa
s observed. In most insect orders, several paralogous hexamerin subcla
sses were identified that diversified after the splitting of the major
insect orders. The dipteran arylphorin/LSP-1-like hexamerins were sub
ject to closer examination, demonstrating hexamerin gene amplification
and gene loss in the brachyceran Diptera. The hexamerin receptors, wh
ich belong to the hexamerin/hemocyanin superfamily, diverged early in
insect evolution, before the radiation of the winged insects. After th
e elimination of some rapidly or slowly evolving sequences, a lineariz
ed phylogenetic tree of the hexamerins was constructed under the assum
ption of a molecular clock. The inferred time scale of hexamerin evolu
tion, which dates back to the Carboniferous, agrees with the available
paleontological data and reveals some previously unknown divergence t
imes among and within the insect orders.