V. Luzhkov et J. Aqvist, COMPUTER-SIMULATION OF PHENYL ESTER CLEAVAGE BY BETA-CYCLODEXTRIN IN SOLUTION, Journal of the American Chemical Society, 120(24), 1998, pp. 6131-6137
Molecular dynamics free energy perturbation simulations utilizing the
empirical valence bond model are used to study the catalytic action of
beta-cyclodextrin in ester hydrolysis. Reaction routes for nucleophil
ic attack on m-tert-butylphenyl acetate by the secondary alkoxide ions
O2(-) and O3(-) of cyclodextrin giving the R and S stereoisomers of t
he ester tetrahedral intermediate are examined. Only the reaction path
leading to the S isomer at O2 shows an activation barrier that is low
er (by about 3 kcal/mol) than the barrier for the corresponding refere
nce reaction in water. The calculated rate acceleration is in excellen
t agreement with experimental data. The catalytic action is accompanie
d by distortion of the macrocycle structure that enables strong bindin
g of the nonpolar part of the substrate along most of the reaction pat
h.