D. Chakravarti et al., LINEAR AMPLIFICATION MAPPING OF POLYCYCLIC AROMATIC HYDROCARBON-REACTIVE SEQUENCES IN H-RAS GENE, DNA and cell biology, 17(6), 1998, pp. 529-539
Linear amplification, or primer directed single-strand DNA synthesis,
is commonly used in applications such as cycle sequencing and mapping
replication block sites in DNA, Although linear amplification reaction
s would be expected to synthesize full-length single-stranded DNA, the
synthesis is often prematurely terminated. We describe the optimizati
on of a linear amplification protocol for synthesizing a full-length (
985-nt) single-stranded pBR322 segment, The enzyme activities of five
DNA polymerases commonly used in PCR amplification, namely, AmpliTaq,
Stoffel fragment, Tth, Pfu, and Vent, were tested either singly or in
combination, The results indicate that the additive action of small am
ounts of proofreading DNA polymerases to a nick-translating polymerase
is optimum for linear amplification. From these results, a linear amp
lification protocol was developed to map DNA synthesis-blocking sites
generated by the reaction of(+/-) anti-benzo[a]pyrene-7,8-diol-9,10-ep
oxide, or anti-or syn-dibenzo[a,l]pyrene-9,10-diol-11,12-epoxide with
H-ras DNA surrounding the oncogenic codon 61 region. The results indic
ate that the central A of H-ras codon 61 (CAA) reacts with these polyc
yclic aromatic hydrocarbons.