Sn. Krylov, COMPUTER-SIMULATION OF DAMPED OSCILLATIONS DURING PEROXIDASE-CATALYZED OXIDATION OF INDOLE-3-ACETIC-ACID, Biophysical chemistry, 72(3), 1998, pp. 285-295
Oscillation patterns in horseradish peroxidase (HRP)-catalyzed oxidati
on of indole-3-acetic acid (IAA) at neutral pH were studied using comp
uter simulation. Under certain conditions, such as the presence of a r
eaction promoter and continuous intake of oxygen from the gaseous phas
e, the simulated system exhibits damped oscillations of the concentrat
ions of oxygen in the aqueous phase, [O-2](aq), and of all the reactio
n intermediates. The critical concentration of oxygen in aqueous phase
, [O-2](cr)(aq), was used to describe the nature of the oscillations.
The critical concentration is the concentration at which the system ab
ruptly changes its properties. If [O-2](aq) is higher than [O-2](cr)(a
q) then the reaction develops as an avalanche, otherwise, the reaction
stops. The nature of oscillations is accounted for by the interaction
of two processes: the consumption/accumulation of oxygen and the accu
mulation/consumption of reaction intermediates. Oscillations are alway
s damped. Neither HRP or umbelliferone (Umb) deactivation nor IAA cons
umption can account for the damping. The nature of the damping is dete
rmined by the termination reactions of free radical intermediates and
ROOH. The three major parameters of oscillations: period of oscillatio
ns, initial amplitude of oscillations and the rate of damping were stu
died as functions of: (i) oxygen concentration in the gaseous phase, (
ii) initial oxygen concentration in aqueous phase, (iii) the concentra
tion of IAA and (iv) the initial concentration of HRP. (C) 1998 Publis
hed by Elsevier Science B.V. All rights reserved.