Background Prenatal diagnosis of chromosomal abnormality requires cyto
genetic analysis of amniotic fetal cells. The necessary culture time d
elays diagnosis, is expensive, and requires substantial scientific exp
ertise. In a masked prospective study, we investigated the feasibility
of PCR amplification of chromosome 21 markers for the prenatal diagno
sis of Down's syndrome. Methods The study population consisted of 2167
pregnant women, undergoing amniocentesis for prenatal diagnosis. In t
his cohort at least 1.5 mL amniotic fluid was available surplus to the
requirements for traditional diagnostic methods. DNA was extracted fr
om the surplus amniotic fluid and amplified in fluorescence-based PCR
reactions, with three small-tandem-repeat markers located on chromosom
e 21. The products of the reactions were analysed on a DNA sequencer t
o identify the presence of two or three copies of chromosome 21. Findi
ngs In 2083 (97.4%) of 2139 samples of amniotic fluid that were not ma
croscopically blood-stained, two DNA markers gave an informative and c
orrect result, identifying 2053 fetuses as normal and 30 as having tri
somy 21 Down's syndrome (as confirmed by cytogenetic analysis). An ext
ra marker was informative in 32 of 41 other clear samples. Thus a tota
l of 99.6% informative results was achieved with these three markers.
Macroscopically bloodstained samples (28 [1.3%]) were unsuitable for D
NA testing. They gave a typical but non-informative result. There were
no false-positive or false-negative results. Interpretation The PCR-b
ased DNA diagnostic test has great potential for improved prenatal dia
gnosis of Down's syndrome, with the advantage that results may be avai
lable within a day.