Investigation of protein-protein associations is important in understa
nding structure and function relationships in living cells. Using Fors
ter-type resonance energy transfer between donor and acceptor labeled
monoclonal antibodies we can assess the cell surface topology of membr
ane proteins against which the antibodies were raised. In our current
work we elaborated a quantitative image microscopic technique based on
the measurement of fluorescence intensities to calculate the energy t
ransfer efficiency on a pixel-by-pixel basis. We made use of the broad
excitation and emission spectrum of cellular autofluorescence for bac
kground correction of images. In addition to the reference autofluores
cence images (UV background) we recorded three fluorescent images (don
or, acceptor and energy transfer signal) of donor-acceptor double labe
led samples, and corrected for spectral spillage of the directly excit
ed donor and acceptor fluorescence into the energy transfer image. Aft
er careful image registration we were able to calculate the energy tra
nsfer efficiency on a pixel-by-pixel basis. In this paper, we also pre
sent a critical comparison between results obtained with this method a
nd other approaches (photobleaching and flow cytometric energy transfe
r measurements).