It has long been recognized that multiple transcription factors contri
bute to the overall regulation of gene expression. Since it is inconce
ivable that a specific transcription factor is assigned to each protei
n-encoding gene, it has been suggested that several factors interact i
n various combinations (Goldberg, 1988; Thomas, 1993). However, it is
not clear if such combinations are established by the relative linear
positions of the corresponding cis-element, by the order in which bind
ing sites are occupied (providing alternative surfaces for protein-pro
tein interactions), or by both of these parameters, possibly in associ
ation with other influences. One of these influences is undoubtedly ch
romatin. While this has previously considered being only a repressive
structure, the recent finding that several transcriptional regulators
can acetylate histones is rapidly leading to the conclusion that modif
ication of histones, and thus chromatin, is a vital step in activation
of the transcriptional machinery (Wade and Wolffe, 1997). Evidence fo
r replacement of the repressive nucleosome structure by TFIID during t
ranscription activation has been postulated by Van Holde and Zlatanova
(1996) and may well be involved in phas promoter activation. Discerni
ng actual steps by which the repressive nucleosome structure is modifi
ed or displaced will provide new insight to plant gene regulation, and
it is tempting to think that histone acetylation will be part of the
key. Once the chromatin structure is relaxed, transcription factors ca
n gain access to the promoter, and a careful evaluation of changes in
cis-element occupancy during embryogenesis using the sensitive DMS foo
tprinting and LMPCR analysis technique will give important clues to th
e types of proteins involved. Another future opportunity for these app
roaches will be to explore events that lead to the cessation of expres
sion as the embryo matures.