J. Hasegawa et al., SOLUTION STRUCTURE OF THERMOSTABLE CYTOCHROME C-552 FROM HYDROGENOBACTER-THERMOPHILUS DETERMINED BY H-1-NMR SPECTROSCOPY, Biochemistry, 37(27), 1998, pp. 9641-9649
The solution structure of a thermostable cytochrome c-552 from a therm
ophilic hydrogen oxidizing bacterium Hydrogenobacter thermophilus was
determined by proton nuclear magnetic resonance spectroscopy. Twenty s
tructures were calculated by the X-PLOR program on the basis of 902 in
terproton distances, 21 hydrogen bonds, and 13 torsion angle constrain
ts. The pairwise average root-mean-square deviation for the main chain
heavy atoms was 0.91 +/- 0.11 Angstrom. The main chain folding of the
cytochrome c-552 was almost the same as that of Pseudomonas aeruginos
a cytochrome c-551 that has 59% sequence identity to the cytochrome c-
552 but is less thermostable. We found several differences in local st
ructures between the cytochromes c-552 and c-551. In the cytochrome c-
552, aromatic-amino interactions were uniquely formed between Arg 35 a
nd Tyr 32 and/or Tyr 41, the latter also having hydrophobic contacts w
ith the side chains of Tyr 32, Ala 38, and Leu 42. Small hydrophobic c
ores were more tightly packed in the cytochrome c-552 because of the o
ccupancies of Ala 5, Met 11, and lie 76, each substituted by Phe 7, Va
l 13, and Val 78, respectively, in the cytochrome c-551. Some of these
structural differences may contribute to the higher thermostability o
f the cytochrome c-552.