Recently published crystallographic studies of mitochondrial bc(1) com
plexes have stimulated renewed interest in the active site architectur
e of these important integral membrane proteins. We present resonance
Raman spectra obtained via variable excitation within the heme Q-band
from samples poised in several different net redox states. Appropriate
subtraction and polarization analysis allows the vibrational behavior
of the individual heme b(L), b(H), and c(1) sites to be assessed. The
spectra of the b hemes are particularly noteworthy. They exhibit evid
ence for a protonation equilibrium involving heme axial ligands and re
veal a marked structural heterogeneity at the heme bH site that most l
ikely involves nonplanar distortions of the macrocycle. The possible i
mplications of these findings for heme functionality are discussed.