The capsid shells of bacteriophage HK97 and several other phages conta
in polypeptides that are covalently linked into complexes so large tha
t they do not enter polyacrylamide gels after denaturation. The enormo
us apparent size of these protein complexes in HK97 derives from a nov
el protein topology. HK97 subunits cross-link via isopeptide bonds int
o oligomers that are closed rings of five or six members. However, pol
ypeptides from neighboring pentamer and hexamer rings intertwine befor
e the covalent cross-links form. As a result, adjacent protein rings c
atenate into a network similar to chainmail armor. In vitro linking an
d unlinking experiments provide strong support for the chainmail model
, which explains the unusual properties of these bacteriophages and ma
y apply to other macromolecular structures.