Fukuyama-type congenital muscular dystrophy (FCMD), one of the most co
mmon autosomal recessive disorders in Japan (incidence is 0.7-1.2 per
10,000 births), is characterized by congenital muscular dystrophy asso
ciated with brain malformation (micropolygria) due to a defect in the
migration of neurons(1). We previously mapped the FCMD gene to a regio
n of less than 100 kilobases which included the marker locus D9S2107 o
n chromosome 9q31 (refs 2-4). We have also described a haplotype that
is shared by more than 80% of FCMD chromosomes, indicating that most c
hromosomes bearing the FCMD mutation could be derived hom a single anc
estor(5). Here we report that there is a retrotransposal insertion of
tandemly repeated sequences within this candidate-gene interval in all
FCMD chromosomes carrying the founder haplotype (87%). The inserted s
equence is about 3 kilobases long and is located in the 3' untranslate
d region of a gene encoding a new 461-amino-acid protein. This gene is
expressed in various tissues in normal individuals, but not in FCMD p
atients who carry the insertion. Two independent point mutations confi
rm that mutation of this gene is responsible for FCMD. The predicted p
rotein, which we term fukutin, contains an amino-terminal signal seque
nce, which together with results from transfection experiments suggest
s that fukutin is a secreted protein. To our knowledge, FCMD is the fi
rst human disease to be caused by an ancient retrotransposal integrati
on.