Methanobacterium thermoautotrophicum (strain Marburg) was found to con
tain two malate dehydrogenases, which were partially purified and char
acterized. One was specific for NAD(+) and catalyzed the dehydrogenati
on of malate at approximately one-third of the rate of oxalacetate red
uction, and the other could equally well use NAD(+) and NADP(+) as coe
nzyme and catalyzed essentially only the reduction of oxalacetate. Via
the N-terminal amino acid sequences, the encoding genes were identifi
ed in the genome of M. thermoautotrophicum (strain Delta H). Compariso
n of the deduced amino acid sequences revealed that the two malate deh
ydrogenases are phylogenetically only distantly related. The NAD(+)-sp
ecific malate dehydrogenase showed high sequence similarity to L-malat
e dehydrogenase from Methanothermus fervidus, and the NAD(P)(+)-using
malate dehyrogenase showed high sequence similarity to L-lactate dehyd
rogenase from Thermotoga maritima and L-malate dehydrogenase from Baci
llus subtilis. A function of the two malate dehydrogenases in NADPH:NA
D(+) transhydrogenation is discussed.