Plant S-adenosyl-L-methionine-dependent methyltransferases (SAM-Mtases
) are the key enzymes in phenylpropanoid, flavonoid and many other met
abolic pathways of biotechnological importance. Here we compiled the a
mino acid sequences of 56 SAM-Mtases from different plants and perform
ed a computer analysis for the conserved sequence motifs that could po
ssibly act as SAM-binding domains. To date, genes or cDNAs encoding at
least ten distinct groups of SAM-Mtases that utilize SAM and a variet
y of substrates have been reported from higher plants. Three amino aci
d sequence motifs are conserved in most of these SAM-Mtases. In additi
on, many conserved domains have been discovered in each group of O-met
hyltransferases (OMTs) that methylate specific substrates and may act
as sites for substrate specificity in each enzyme. Finally, a diagramm
atic representation of the relationship between different OMTs is pres
ented. These SAM-Mtase sequence signatures will be useful in the ident
ification of SAM-Mtase motifs in the hitherto unidentified proteins as
well as for designing primers in the isolation of new SAM-Mtases from
plants.