We have clearly resolved four chromosomal bands from four Pichia pasto
ris (Komagataella pastoris) strains by using contour-clamped homogeneo
us electric field gel electrophoresis. The size of the P. pastoris chr
omosomal bands ranged from 1.7 Mb to 3.5 Mb and total genome size was
estimated to be 9.5 Mb to 9.8 Mb; however, chromosome-length polymorph
isms existed among four strains. Thirteen cloned genes isolated from s
train GTS115 were assigned to the separated chromosomes, revealing tha
t different hybridization patterns were observed in the AOX2 and URA3
genes among strains. P. pastoris is frequently used as an efficient ho
st for heterologous gene expressions. We analysed chromosomal stabilit
y of strain GTS115-derived recombinant cell expressing human serum alb
umin during serial cultivation under the condition of vegetative and n
on-selective growth. No chromosomal rearrangements were observed and t
he expression constructs integrated into the his4 locus on chromosome
I were very stable even at 83 generations, suggesting that stable expr
ession would be carried out even in large-scale fermentation. (C) 1998
John Wiley & Sons, Ltd.