H. Sigel, METAL ION-ASSISTED STACKING INTERACTIONS AND THE FACILITATED HYDROLYSIS OF NUCLEOSIDE 5'-TRIPHOSPHATES, Pure and applied chemistry, 70(4), 1998, pp. 969-976
The self-association properties of the common nucleosides and nucleoti
des are summarized; if defined via their nucleobases they decrease in
the order, adenine > guanine > hypoxanthine > cytosine greater than or
similar to uracil. Next, some aspects of the metal ion-promoted depho
sphorylation of nucleoside 5'-triphosphates (NTPs) are reviewed. It is
shown that the dephosphorylation rate in the presence of Cu2+ decreas
es in the series, ATP > GTP > ITP > pyrimidine-NTPs. Similarly, additi
on of AMP, GMP or IMP (decreasing order of effectiveness) to a Cu2+/AT
P system facilitates the dephosphorylation reaction further because on
e of the two ATPs in the stacked reactive intermediate, occurring in l
ow concentration, [Cu-2(ATP)](2)(OH)(-), has a structural role and thi
s 'enzyme'-like ATP(4-) can be replaced by one of the mentioned nucleo
side 5'-monophosphates. These results demonstrate how weak interaction
s, i.e. aromatic-ring stacking, can govern the reactivity of a system.
Next to stacking, the purine(N7)-metal ion interaction allowing bridg
ing and stabilization of the stack by inclusion of the phosphate group
(s) is important; therefore, addition of tubercidin 5'-monophosphate (
= 7-deaza-AMP(2-)) to Cu2+/ATP inhibits the reactivity of the system.
The structural delicacy of the reactive intermediate is further emphas
ized by the inhibiting effects of 1,N-6-ethenoadenosine 5'-monophospha
te (epsilon-AMP(2-)) and adenosine 5'-monophosphate N(1)-oxide; in con
trast, the dianion of the antiviral 9-[2-(phosphonomethoxy)ethyl]adeni
ne (PMEA(2-)) mimics AMP(2-) exceedingly well and facilitates even fur
ther the Cu2+-promoted dephosphorylation of ATP.