Two mitochondrial DNA molecules which represent major Ovis aries mtDNA
haplogroups were cloned and comparatively sequenced to assess the deg
ree of intraspecific variation. A total of 9623 bp that correspond to
58% of both mitochondrial genomes were determined. The control region,
the Cytb, ND2, ND3, ND4L, COIII and 12 tRNA genes, including the orig
in of L-strand replication, were completely characterized. Partial seq
uence information was obtained from the 12S and 16S rRNA and an additi
onal six protein coding and six tRNA genes. The control regions of the
two mtDNAs showed a nucleotide divergence of 4.34% while coding regio
ns differed by 0.44%. The number of sheep coding region substitutions
was similar to values observed in intraspecific comparisons of mitocho
ndrial DNAs that represent remote points in genealogical trees of mice
and humans. However, replacement substitutions were only observed at
similar to 30% of the rate in mice and similar to 20% of the rate in h
umans. Nucleotide substitutions with a potential for phenotypic effect
s were found in the 12S aod 16S rRNA and in the ND1 and COIII genes.