MONITORING IMPACT OF A PESTICIDE TREATMENT ON BACTERIAL SOIL COMMUNITIES BY METABOLIC AND GENETIC FINGERPRINTING IN ADDITION TO CONVENTIONAL TESTING PROCEDURES
B. Engelen et al., MONITORING IMPACT OF A PESTICIDE TREATMENT ON BACTERIAL SOIL COMMUNITIES BY METABOLIC AND GENETIC FINGERPRINTING IN ADDITION TO CONVENTIONAL TESTING PROCEDURES, Applied and environmental microbiology, 64(8), 1998, pp. 2814-2821
Herbogil (dinoterb), a reference herbicide, the mineral oil Oleo (para
ffin oil used as an additive to herbicides), and Goltix (metamitron) m
ere taken as model compounds for the study of impacts on microbial soi
l communities. After the treatment of soil samples, effects on metabol
ic sum parameters were determined by monitoring substrate-induced resp
iration (SLR) and dehydrogenase activity, as well as carbon and nitrog
en mineralization. These conventional ecotoxicological testing procedu
res are used in pesticide registration. inhibition of biomass-related
activities and stimulation of nitrogen mineralization were the most si
gnificant effects caused by the application of Herbogil. Even though G
oltix and Oleo were used at a higher dosage (10 times higher), the app
lication of Goltix resulted in smaller effects and the additive Oleo w
as the least-active compound, with minor stimulation of test parameter
s at later observation times. The results sen ed as a background for i
nvestigation of the power of ''fingerprinting'' methods in microbial e
cology. Changes in catabolic activities induced by treatments were ana
lyzed by using the 95 carbon sources provided by the BIOLOG system. Va
riations in the complex metabolic fingerprints demonstrated inhibition
of many catabolic pathways after the application of Herbogil. Again,
the effects of the other compounds were expressed at much Ion er level
s and comprised stimulations as well as inhibitions. Testing for signi
ficance by a multivariate t test indicated that the sensitivity of thi
s method was similar to the sensitivities of the conventional testing
procedures. The variation of sensitive carbon sources, as determined b
y factor weights at different observation times, indicated the dynamic
s of the community shift induced by the Herbogil treatment in more det
ail. DNA extractions from soil resulted in a collection of molecules r
epresenting the genetic composition of total bacterial communities. Di
stinct and highly reproducible community patterns, or genetic fingerpr
ints, resulting from application of the different herbicides were obta
ined by the sequence-specific separation of partial 16S rDNA amplifica
tion products in temperature gradient gel electrophoresis. Significant
pattern variations were quantified. For detailed analysis, applicatio
n-responsive bands from the Herbogil and Oleo treatments were sequence
d and their tentative phylogenetic positions were identified. Data int
erpretation and the potentials and biases of the additional observatio
n windows on microbial communities are discussed.