Malonic acid hydroxamate derivatives bis-substituted at the methylene
group were synthesized as potential nonpeptidic inhibitors of human ne
utrophil collagenase (MMP8). The presence of an aromatic residue both
at the C2 malonic acid position and in the C-terminal tail for hydroph
obic interactions with the surface-exposed S1 binding site and the S1'
pocket of the enzyme, respectively, was found to be sufficient for su
bmicromolar inhibition potencies. For optimal insertion of the aryl am
ide group into the hydrophobic S1' pocket, spacing of the C-terminal p
henyl group by at least a SC-chain was required. In view of these resu
lts the achiral indan-2,2-dicarboxylic acid was used to mimic the 2-be
nzyl-2-methylmalonic acid residue, and its derivatization to the 3-phe
nylpropyl amide hydroxamate produced a potent, achiral, low-mass inhib
itor of MMP8 (K-i = 0.3 mu M), the binding mode of which was unambiguo
usly determined by X-ray crystallographic analysis.