I. Buskiewtcz et al., INTERACTION OF HIV TAT PEPTIDES WITH TRNA(PHE) FROM YEAST, Collection of Czechoslovak Chemical Communications, 63(6), 1998, pp. 842-850
We present data on the interaction of arginine-rich peptides of human
immunodeficiency virus (HIV-Tat) with tRNA(Phe) of Saccharomyces cerev
isiae. We have found that tRNA forms complexes with the Tat1 peptide o
f amino acid sequence GRKKRRQRRRA and its mutants where R is replaced
by D-arginine, citrulline or ornithine. The structure of tRNA-Tat1 com
plex was probed by specific RNases digestions and Pb2+-induced cleavag
e of phosphodiester bond of guanosine. The nucleotide sequence UGGG lo
cated in the dihydrouridine loop of tRNA(Phe) binds to Tat peptide and
therefore is specifically protected against RNases and is not hydroly
zed by Pb2+ ion. it seems that the peptide-RNA complex formation depen
ds on direct recognition of guanine moieties of tRNA with arginine res
idues. These interactions are similar to those observed in many DNA-pr
otein complexes, but are different from those previously observed for
TAR RNA-Tat complexes.