P. Kane et al., MODELING OF THE SODIUM COMPLEX OF A CALIXARENE TETRAESTER IN THE 1,3-ALTERNATE CONFORMATION, JOURNAL OF MOLECULAR MODELING, 4(8), 1998, pp. 259-267
This paper describes the use of molecular mechanics to model the geome
try of the sodium complex of a calix[4] arene tetraester, in the 1,3-a
lternate conformation 1. Partial charges were assigned to the calixare
ne on the basis of semi-empirical (AM1, PM3, MNDO, INDO, CNDO and ZIND
O) calculations and the binding of the sodium ion to the calixarene wa
s modelled using molecular mechanics. Agreement between the optimised
and X-ray structures of the complex was very good. The effect of placi
ng the cation in different starting positions on the energy-minimised
geometry of the complex is described.