MODELING OF THE SODIUM COMPLEX OF A CALIXARENE TETRAESTER IN THE 1,3-ALTERNATE CONFORMATION

Citation
P. Kane et al., MODELING OF THE SODIUM COMPLEX OF A CALIXARENE TETRAESTER IN THE 1,3-ALTERNATE CONFORMATION, JOURNAL OF MOLECULAR MODELING, 4(8), 1998, pp. 259-267
Citations number
30
Categorie Soggetti
Biophysics,Biology,Chemistry,"Computer Science Interdisciplinary Applications
Journal title
JOURNAL OF MOLECULAR MODELING
ISSN journal
16102940 → ACNP
Volume
4
Issue
8
Year of publication
1998
Pages
259 - 267
Database
ISI
SICI code
1610-2940(1998)4:8<259:MOTSCO>2.0.ZU;2-G
Abstract
This paper describes the use of molecular mechanics to model the geome try of the sodium complex of a calix[4] arene tetraester, in the 1,3-a lternate conformation 1. Partial charges were assigned to the calixare ne on the basis of semi-empirical (AM1, PM3, MNDO, INDO, CNDO and ZIND O) calculations and the binding of the sodium ion to the calixarene wa s modelled using molecular mechanics. Agreement between the optimised and X-ray structures of the complex was very good. The effect of placi ng the cation in different starting positions on the energy-minimised geometry of the complex is described.