CORRECTING FOR ELECTROSTATIC CUTOFFS IN FREE-ENERGY SIMULATIONS - TOWARD CONSISTENCY BETWEEN SIMULATIONS WITH DIFFERENT CUTOFFS

Citation
H. Resat et Ja. Mccammon, CORRECTING FOR ELECTROSTATIC CUTOFFS IN FREE-ENERGY SIMULATIONS - TOWARD CONSISTENCY BETWEEN SIMULATIONS WITH DIFFERENT CUTOFFS, The Journal of chemical physics, 108(23), 1998, pp. 9617-9623
Citations number
25
Categorie Soggetti
Physics, Atomic, Molecular & Chemical
ISSN journal
00219606
Volume
108
Issue
23
Year of publication
1998
Pages
9617 - 9623
Database
ISI
SICI code
0021-9606(1998)108:23<9617:CFECIF>2.0.ZU;2-T
Abstract
The use of electrostatic cutoffs in calculations of free energy differ ences by molecular simulations introduces errors, Even though both sol ute-solvent and solvent-solvent cutoffs are known to create discrepanc ies, past efforts have mostly been directed toward correcting for the solute-solvent cutoffs. In this work, an approach based on the general ized reaction field formalism is developed to correct for the solvent- solvent cutoff errors as well. It is shown using a series of simulatio ns that when the cutoff lengths are significantly smaller than the hal f unit cell size, and the solute-solvent cutoff is not much larger tha n the solvent-solvent cutoff, the new algorithm is able to yield bette r agreement among simulations employing different truncation lengths. (C) 1998 American Institute of Physics.