Am. Deacon et al., THE SHAKE-AND-BAKE STRUCTURE DETERMINATION OF TRICLINIC LYSOZYME, Proceedings of the National Academy of Sciences of the United Statesof America, 95(16), 1998, pp. 9284-9289
The crystal structure of triclinic lysozyme, comprised of 1,001 non-H
protein atoms and approximate to 200 bound water molecules, has been d
etermined ab initio (using native data alone) by the ''Shake-and-Bake'
' method by using the computer program SnB, This is the largest struct
ure determined so far by the SnB program, Initial experiments, using d
efault SnB parameters derived from studies of smaller molecules, were
unsuccessful. In fact, such experiments produced electron density maps
dominated by a single large peak. This problem was overcome by consid
ering the choice of protocol used during the parameter-shift phase ref
inement. When each phase was subjected to a single shift of +/-157.5 d
egrees during each SnB cycle, an unusually high percentage of random t
rials (approximate to 22%) yielded correct solutions within 750 cycles
, This success rate is higher than that typically observed, even for m
uch smaller structures.