Background & Aims: Although multiple studies have focused on Helicobac
ter pylori, little is known about the mucosa-associated flora of the c
olon. The aim of this study was to detect bacteria directly in colonic
mucosa from patients screened for colorectal cancer. Methods: Bacteri
a were quantified with the polymerase chain reaction and identified by
comparative sequence analysis in colonoscopic biopsy specimens from 3
1 asymptomatic and 34 symptomatic controls with normal colonoscopic fi
ndings, 29 patients with colonic adenoma, and 31 patients with colorec
tal carcinoma. In 41 patients, intra- and extracellular location of ba
cteria was confirmed with the gentamicin protection assay. Results: No
bacteria were detected in biopsy specimens from 97% of asymptomatic a
nd 69% of symptomatic controls. In contrast, bacterial concentrations
of 10(3)-10(5) colony-forming units per microliter were detected in bi
opsy specimens from both malignant and macroscopically normal tissue i
n 90% and 93% of patients with adenoma and carcinoma, respectively. E.
coil and coil-like bacteria were shown to colonize the colonic mucosa
in 82% of these patients. The gentamicin protection assay indicated t
hat E. coli was partially intracellular in 87% of patients with adenom
a and carcinoma and in none of the controls. Conclusions: The colonic
mucosa of patients with colorectal carcinoma but not normal colonic mu
cosa is colonized by intracellular E. coil.