Depletion of phytoplankton cells and pigments over coral reefs was stu
died in the Gulf of Aqaba, Red Sea, during 1994-1996. Phytoplankton ab
undance and chlorophyll (Chl) a concentrations were 15-65% lower near
the reefs than in the adjacent open waters. The decrease in chlorophyl
l. near the reef was typically associated with an increase in the conc
entration of its degradation products, the pheopigments. The steepest
slope of these cross-shore gradients occurred within 1-3 m above botto
m. More than 50% of the variation in the extent of the chlorophyll gra
dients, but not of pheopigments, could be explained by the advection o
f water during 2 h preceding the transect and by the concentration of
Chl a in the open water. No cross-shore gradients were observed at a s
andy-bottom site without reef. Eukaryotic phytoplankton (<5 mu m) cont
ributed >70% of; the total depleted carbon near the reef during winter
, while the cyanobacterium Synechococcus (1 mu m) contributed the larg
est share in summer. The proportions of different taxa in depleted fra
ctions were similar to those in ambient waters, indicating no size sel
ectivity. Direct measurements of phytoplankton removal rates were made
in water passing through a unique 5-m-long perforated reef, dominated
by herbivorous soft corals. The waters downstream of that reef were s
trongly depleted of phytoplankton (10 to >36%, or 32 to >100 ng Chl a
liter(-1)). When converted to carbon fluxes, these rates greatly excee
ded reported values of carbon input to coral reefs via zooplankton pre
dation. Phytoplankton grazing is an important component of benthic-pel
agic coupling in coral reefs.