Ceramide has emerged as a potential regulator of diverse cellular func
tions, and a few direct targets have been identified for its action in
cluding protein kinases and phosphatases. In this study, we have purif
ied the predominant ceramide-activated protein phosphatase (CAPP) from
rat brain. Utilizing a novel chromatographic approach, CAPP was purif
ied to near homogeneity using hydrophobic interaction chromatography o
n phenyl Sepharose followed by anion-exchange chromatography on MonoQ.
The purified protein was composed of three major bands on SDS-polyacr
ylamide gel electrophoresis which comigrated with the three subunits o
f heterotrimeric PP2A. Immunologic studies further identified CAPP to
be composed predominantly of heterotrimeric AB'C and AB alpha C as wel
l as heterodimeric PP2A (AC), where C is the catalytic subunit, and A
and B are regulatory subunits. These results were also supported by th
e coelution of CAPP with trimeric and dimeric PP2A on size-exclusion c
hromatography. These studies provide a convenient and efficient method
for the isolation of trimeric and dimeric PP2A, and they allow the bi
ochemical investigation of CAPP.