Jl. Viladot et al., PROBING THE MECHANISM OF BACILLUS 1,3-1,4-BETA-D-GLUCAN 4-GLUCANOHYDROLASES BY CHEMICAL RESCUE OF INACTIVE MUTANTS AT CATALYTICALLY ESSENTIAL RESIDUES, Biochemistry, 37(32), 1998, pp. 11332-11342
The role of the key catalytic residues Glu134 and Glu138 in the retain
ing 1,3-1,4-beta-glucanase from Bacillus licheniformis is probed by a
chemical rescue methodology based on enzyme activation of inactive mut
ants by the action of added nucleophiles. While Glu134 was proposed as
the catalytic nucleophile on the basis of affinity labeling experimen
ts, no functional proof supported the assignment of Glu138 as the gene
ral acid-base catalyst. Alanine replacements are prepared by site-dire
cted mutagenesis to produce the inactive E138A and E134A mutants. Addi
tion of azide reactivates the mutants in a concentration-dependent man
ner using an activated 2,4-dinitrophenyl glycoside substrate. The chem
ical rescue operates by a different mechanism depending on the mutant
as deduced from H-1 NMR monitoring and kinetic analysis of enzyme reac
tivation. E138A yields the beta-glycosyl azide product arising from nu
cleophilic attack of azide on the glycosyl-enzyme intermediate, thus p
roving that Glu138 is the general acid-base residue. Azide activates t
he deglycosylation step (increasing k(cat)), but it also has a large e
ffect on a previous step (as seen by the large decrease in K-M, the in
crease in k(cat)/K-M, and the pH dependence of activation), probably i
ncreasing the rate of glycosylation through Bronsted acid catalysis by
enzyme-bound HN3. By contrast, azide reactivates the E134A mutant thr
ough a single inverting displacement to give the alpha-glycosyl azide
product, consistent with Glu134 being the catalytic nucleophile. Forma
te as an exogenous nucleophile has no effect on the E138A mutant, wher
eas it is a better activator of E134A than azide. Although the reactio
n yields the normal hydrolysis product, a transient compound was detec
ted by H-1 NMR, tentatively assigned to the alpha-glycosyl formate add
uct. This is the first case where a nonmodified sugar gives a long-liv
ed covalent intermediate that mimics the proposed glycosyl-enzyme inte
rmediate of retaining glycosidases.