Modular polyketide synthases (PKSs), such as the 6-deoxyerythronolide
B synthase (DEBS), are multifunctional proteins that govern the synthe
sis of a number of clinically important natural products. The modular
arrangement of active sites within these enzymes suggests the possibil
ity of a combinatorial approach to the synthesis of novel bioactive po
lyketides. The efficacy of combinatorial strategies toward altering th
e starter unit specificity of polyketide synthases critically depends
on controlling the supply of competing endogenous starter acids. Using
DEBS 1-TE, a bimodular derivative of DEBS,we aimed to determine wheth
er the beta-ketosynthase (KS) domain responsible for condensation in t
he first module also has the ability to prime its own biosynthesis by
catalyzing the decarboxylation of methylmalonyl-CoA to produce propion
yl-CoA. In contrast to earlier reports with a closely similar mini-PKS
DEBS 1+TE, we have found that rigorously purified DEBS 1-TE does not
catalyze the decarboxylation of methylmalonyl-CoA.