Over the past decade the tools of modern molecular biology have provid
ed unique insights into our fundamental understanding of developmental
systems. These insights have been gleaned from the study of a wide va
riety of model organisms including yeast (Saccharomyces cerevisiae), f
ly (Drosophila), worm (Caenorhabditis elegans), and mouse. in man, the
first analysis of developmental systems started with sexual different
iation and focused on the role of Y-linked genes. The presence of livi
ng developmental mutants in man affecting sexual development and the e
arly technology of deletion mapping facilitated the isolation and iden
tification of small segments of putative DNA suspected to contain sex-
determining genes. The isolation of genes such as SRY (Sex Related gen
e on Y) has provided the first insights into the molecular biology of
human sexual differentiation. The focus on the Y chromosome has brough
t further insights into chromosomal pairing, statural determinants in
man, oncogenesis, spermatogenesis, haploid genomes, and the lineage of
man himself. This paper provides the circumstantial and direct eviden
ce to illustrate the importance of the Y chromosome in reproductive di
sorders, and in the analysis of haploid genomes.