T. Suzuki et al., MISINCORPORATION OF 2'-DEOXYOXANOSINE 5'-TRIPHOSPHATE BY DNA-POLYMERASES AND ITS IMPLICATION FOR MUTAGENESIS, Biochemistry, 37(33), 1998, pp. 11592-11598
2'-Deoxyoxanosine (dOxo) is a novel DNA lesion produced by the reactio
n of 2'-deoxyguanosine (dGuo) with nitrous acid and nitric oxide [Suzu
ki, T., Yamaoka, R., Nishi, M., Ide, H., and R Makino, K. (1996) J. Am
. Chem. Sec. 118, 2515-2516]. In this work, 2'-deoxyoxanosine 5'-triph
osphate (dOTP) was prepared by nitrous acid treatment of 2'-deoxyguano
sine 5'-triphosphate (dGTP), and its incorporation into DNA by DNA pol
ymerases was investigated to elucidate the substrate and mutagenic pro
perties of dOTP. Primed M13mp18 DNA was replicated by Escherichia coli
DNA polymerase I Klenow fragment (Pal I Kf) in the presence of three
normal dNTPs and dOTP or 2'-deoxyxanthosine 5'-triphosphate (dXTP), an
other major product of reaction of dGTP with nitrous acid and nitric o
xide. dOTP substituted for dGTP and to a lesser extent for dATP, while
dXTP substituted slightly for dGTP but not for dATP. Neither dOTP nor
dXTP substituted for dCTP and dTTP. The similar results were obtained
for the incorporation by T7 DNA polymerase deficient in 3'-5' exonucl
ease [T7(exo(-))]. To quantify the substitution efficiency? kinetic pa
rameters for incorporation of dOTP and dXTP opposite template C or T b
y Pol I Kf (exo-) were determined and compared with those for dGTP usi
ng oligodeoxynucleotide templates. Incorporation efficiencies (f = V-m
ax/K-m) of dOTP (f = 0.28% min(-1) mu M-1) and dXTP (f = 0.10% min(-1)
mu M-1) opposite template C were much lower than that of dGTP (f = 15
06% min(-1) mu M-1), Frequencies of mutagenic incorporation of dOTP op
posite template T were dependent on the nearest neighbor base pairs, a
nd 1.6-3.9-fold higher than those for dGTP with the nearest neighbors
containing G.C pairs. dXTP was not incorporated opposite template T wi
th all four nearest neighbors. These data suggest that formation of dO
TP, but not dXTP, from dGTP with nitrous acid or nitric oxide in the i
ntracellular nucleotide pool would result in the elevation of the muta
tion frequency.