This article presents the theoretical and practical aspects involved i
n the design and analysis of pharmacokinetic-pharmacodynamic modelling
studies. The main features of the protocol of pharmacokinetic-pharmac
odynamic studies are discussed with special focus on experimental desi
gns in relation to individual and population approaches. Some basic ph
armacodynamic models (such as linear, log-linear, hyperbolic and sigmo
id models) are presented as well as more complex time-dependent models
(effect compartment and physiological indirect response, tolerance mo
dels) which are required when the concentration-effect relationship sh
ows a hysteresis loop. The methods of estimation, with special focus o
n the individual and populations approaches, are covered, along with t
he way pharmacodynamic models and methods of estimation can be applied
to real data and the information required to criticise the results of
modelling. We also present some real problems frequently encountered
when performing pharmacokinetic-pharmacodynamic modelling and give som
e potential solutions (problems with hysteresis loops, lack of converg
ence, problems with residuals). The last section discusses the signifi
cance of pharmacodynamic parameters.