Histones are fundamental structural components of chromatin and are ex
pected to play important roles in chromosome dynamics. Here, we presen
t direct evidence that Cse4p, a histone H3 variant, is a structural co
mponent of the core centromere of S. cerevisiae. In histone H4 and Cse
4p mutants, the core centromere chromatin structure is disrupted at re
strictive temperature. Overexpression of Cse4p suppresses this defect
in the H4 mutant, implying that the two proteins act together in centr
omere structure. We show by chromatin immunoprecipitation experiments
that Cse4p is specifically cross-linked to centromeric DNA. Furthermor
e, by immunofluorescence microscopy, Cse4p is found in discrete foci c
onsistent with that expected for centromeres. These results suggest th
e kinetochore is assembled on a specialized centromeric nucleosome con
taining Cse4p.