Several Clostridium perfringens genotype E isolates, all associated wi
th hemorrhagic enteritis of neonatal calves, were identified by multip
lex PCR. These genotype E isolates were demonstrated to express alpha
and iota toxins, but, despite carrying sequences for the gene (cpe) en
coding C. perfringens enterotoxin (CPE), were unable to express CPE. T
hese silent cpe sequences were shown to be highly conserved among type
E isolates. However, relative to the functional cpe gene of type A is
olates, these silent type E cpe sequences were found to contain nine n
onsense and two frameshift mutations and to lack the initiation codon,
promoters, and ribosome binding site. The type E animal enteritis iso
lates carrying these silent cpe sequences do not appear to be clonally
related, and their silent type E cpe sequences are always located, ne
ar the iota toxin genes, on episomal DNA. These findings suggest that
the highly conserved, silent cpe sequences present in most or all type
E isolates may have resulted from the recent horizontal transfer of a
n episome, which also carries iota toxin genes, to several different t
ype A C. perfringens isolates.