In this paper, we describe the cloning of the MS5 gene, a gene essenti
al for male fertility in Arabidopsis. We previously defined the MS5 lo
cus by characterizing an EMS-induced allele, ms5-1. We identified a ne
w allele of MS5 (ms5-2) that was T-DNA-generated and used the T-DNA ta
g to clone the gene. Sequencing of mutant and wildtype alleles togethe
r with complementation of the ms5-1 mutant phenotype with a wild-type
genomic clone confirmed the identity of the gene. Differences between
the phenotypes of the two mutant alleles could be attributed to differ
ences in mutant gene structure. The semidominant and dominant negative
phenotypes of the ms5-2 mutant probably result from production of a t
runcated polypeptide. An unknown locus in Landsberg erecta can counter
act the dominant negative phenotype of ms5-2. Mutations in MS5 cause t
he formation of 'polyads' - tetrads with more than four pools of chrom
osomes after male meiosis. Similarities between the MS5 sequence and t
hat of a number of proteins were found; two that may be significant we
re with a synaptonemal complex protein and with a regulatory subunit o
f a cyclin dependent kinase. The MS5 gene is a member of a small gene
family highly conserved amongst plant species.