Many organisms use fatty acid derivatives as biological regulators. In
plants, for example, fatty acid-derived signals have established role
s in the regulation of developmental and defense gene expression. Grow
ing numbers of these compounds, mostly derived from fatty acid hydrope
roxides, are being characterized. The model plant Arabidopsis thaliana
is serving a vital role in the discovery of fatty acid-derived signal
molecules and the genetic analysis of their synthesis and action. The
Arabidopsis genome sequencing project, the availability of large numb
ers of mutants in fatty acid biosynthesis and signal transduction, as
well as excellent pathosystems, make this plant a tremendously useful
model for research in fatty acid signaling. This review summarizes rec
ent progress in understanding fatty acid signaling in A. thaliana and
highlights areas of research where progress is rapid. Particular atten
tion is paid to the growing literature on the jasmonate family of regu
lators and their role in defense against insects and microbial pathoge
ns.