Phenology of organismal development varies between growing seasons acc
ording to the weather and also varies within growing seasons across to
poclimatic gradients. Combining these factors is necessary to predict
landscape-level patterns of phenology and their consequences for popul
ation dynamics. We developed a model on a Geographic Information Syste
m (GIS) that predicts phenology of adult emergence of the threatened B
ay checkerspot butterfly across complex terrain under variable weather
. Physiological time was modeled by accumulated slope-specific direct
insolation. Insolation sums through growing seasons were calculated fo
r each cell of a digital terrain model (skipping over cloudy days) unt
il a threshold for adult emergence was reached. Emergence times of adu
lt butterflies for a given year were then mapped out across a 100-ha a
rea. To generate predicted emergence curves for the population in a gi
ven year, these maps of emergence times were then modified by incorpor
ating microdistributions of postdiapause larvae. Differ ent larval mic
rodistributions changed both the magnitude and shape of emergence curv
es under the same yearly weather and could change mean population-wide
emergence dates by 11 days. Reproductive success in this butterfly is
strongly dependent on the timing of adult emergence, and these models
provide insights into the effects of weather, topography and populati
on history on population dynamics. Because adult emergence phenology i
s often a key component of reproductive success for insects, understan
ding the components of phenological variation in space and time in com
plex terrain may provide insights into population dynamics for managem
ent of pests and conservation of rare species.