While many aspects of prion disease biology are unorthodox, perhaps th
e most fundamental paradox is posed by the coexistence of inherited, s
poradic, and infectious forms of these diseases. Sensible molecular me
chanisms for prion propagation must explain all three forms of prion d
iseases in a manner that is compatible with the formidable array of ex
perimental data derived from histopathological, biochemical, biophysic
al, human genetic, and transgenetic studies. In this review, we explor
e prion disease pathogenesis initially from the perspective of an auto
somal dominant inherited disease. Subsequently, we examine how an intr
insically inherited disease could present in sporadic and infectious f
orms. Finally, we explore the phenomenologic constraints on models of
prion replication with a specific emphasis on biophysical studies of p
rion protein structures.