Our understanding of microbial adaptations to diverse and threatening
environments is limited by the assumption that the behavior of individ
ual bacteria can be accurately determined by measuring the behavior of
populations. Recent advances in gene expression reporter systems, flu
orescence microscopy and flow cytometry allow microbiologists to explo
re the complex interactions between bacteria and their environment wit
h single cell resolution. The, application of these technologies has b
een particularly useful in systems, such as host-pathogen interactions
, where genetic analysis is often cumbersome. Recently, flow cytometry
is increasingly being applied to study host-pathogen interactions.