hnRNP A1 regulates alternative splicing by antagonizing SR proteins. I
t consists of two closely related, tandem RNA-recognition motifs (RRMs
), followed by a glycine-rich domain. Analysis of variant proteins wit
h duplications, deletions, or swaps of the RRMs showed that although b
oth RRMs ave required for alternative splicing function, each RRM play
s distinct roles, and their relative position is important. Surprising
ly, RRM2 but not RRM1 could support this function when duplicated, des
pite their very similar structure. Specific RNA binding and annealing
are not sufficient for hnRNP Al alternative splicing function. These o
bservations, together with phylogenetic and structural data, suggest t
hat the two RRMs are quasi-symmetric but functionally nonequivalent mo
dules that evolved as components of a single bipartite domain.