Ca. Francis et al., QUANTIFICATION OF CATECHOL 2,3-DIOXYGENASE GENE HOMOLOGY AND BENZOATEUTILIZATION IN INTERTIDAL SEDIMENTS, Aquatic microbial ecology, 15(3), 1998, pp. 225-231
The catechol 2,3-dioxygenase (C23O) gene, xylE, from the TOL plasmid p
athway was used to probe naturally occurring bacterial communities in
an intertidal microbial mat. Bound probe was quantified by densitometr
ic analysis of slot blots using colorimetric detection of hybridizatio
n between the probe and total DNA extracts from the sediments. The C23
O gene encodes the key ring-breaking enzyme of the toluene degradation
pathway, of which benzoate is an intermediate. Radiotracer experiment
s using C-14-benzoate detected benzoate mineralization in these sedime
nts, corroborating the presence of both the genetic potential and in s
itu activity for this transformation.