In recent years, significant information has been accumulated on the m
olecular alterations that take place during development of transitiona
l cell carcinoma (TCC). A number of studies aimed at defining loss of
heterozygosity have shown a general chromosomal instability in TCC wit
h loss of parts of chromosome 9 at early stages of papillomas, and of
chromosomes 11, 13, 3, 4, 8, 17 and 18 during further development of t
he tumor. Oncogenes are activated, exemplified by mutations in the ras
gene family and overexpression of the c-erbB-2 gene, in a minor fract
ion of tumors. Alterations of tumor suppressors (involved in control o
f the cell cycle, DNA quality control and activation of apoptosis) see
m to be frequently involved. Among these p53 has a key role, and one p
53 allele is frequently lost in TCC followed by mutation of the remain
ing allele. These alterations are correlated with survival, disease pr
ogression, invasion and recurrence. Also frequently lost are the cell
cycle control genes p16 and p15. The predictive value of this has not
yet been determined. Studies of glycosylation genes have shown downreg
ulation of the ABO gene, followed by loss of ABO blood group structure
s and accumulation of the Lewis cell adhesion molecules in high grade
tumors. Functional proteome analysis has furthermore identified biomar
kers that are correlated with grade and stage. Molecular models for TC
C development can now be built, and clinical testing of these is urgen
tly needed.