Developmental regulation of the mouse Xist gene at the onset of X chro
mosome inactivation is mediated by RNA stabilization. Here, we show th
at alternate promoter usage gives rise to distinct stable and unstable
RNA isoforms. Unstable Xist transcript initiates at a novel upstream
promoter, whereas stable Xist RNA is transcribed from the previously i
dentified promoter and from a novel downstream promoter. Analysis of c
ells undergoing X inactivation indicates that a developmentally regula
ted promoter switch mediates stabilization and accumulation of Xist RN
A on the inactive X chromosome.